| Issue Date | Title | Author(s) |
| 17-Jun-2021 | 3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia | Yang, Lu; Chen, Fengling; Zhu, Haichuan; Chen, Yang; Dong, Bingjie; Shi, Minglei; Wang, Weitao; Jiang, Qian; Zhang, Leping; Huang, Xiaojun; Zhang, Michael Q.; Wu, Hong |
| 11-Jan-2024 | Aging-disturbed FUS phase transition impairs hematopoietic stem cells by altering chromatin structure | Tang, Baixue; Wang, Xinming; He, Hanqing; Chen, Ruiqing; Qiao, Guofeng; Yang, Yang; Xu, Zihan; Wang, Longteng; Dong, Qiongye; Yu, Jia; Zhang, Michael Q.; Shi, Minglei; Wang, Jianwei |
| Oct-2023 | Aging-induced pseudouridine synthase 10 impairs hematopoietic stem cells | Wang, Yuqian; Zhang, Zhenzhen; He, Hanqing; Song, Jinghui; Cui, Yang; Chen, Yunan; Zhuang, Yuan; Zhang, Xiaoting; Li, Mo; Zhang, Xinxiang; Zhang, Michael Q.; Shi, Minglei; Yi, Chengqi; Wang, Jianwei |
| 2017 | Allelic reprogramming of 3D chromatin architecture during early mammalian development | Du, Zhenhai; Zheng, Hui; Huang, Bo; Ma, Rui; Wu, Jingyi; Zhang, Xianglin; He, Jing; Xiang, Yunlong; Wang, Qiujun; Li, Yuanyuan; Ma, Jing; Zhang, Xu; Zhang, Ke; Wang, Yang; Zhang, Michael Q.; Gao, Juntao; Dixon, Jesse R.; Wang, Xiaowo; Zeng, Jianyang; Xie, Wei |
| 2016 | Analysis of C-elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT) | Ma, Xiaopeng; Zhan, Ge; Sleumer, Monica C.; Chen, Siyu; Liu, Weihong; Zhang, Michael Q.; Liu, Xiao |
| 2017 | BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions | Liang, Zhengyu; Li, Guipeng; Wang, Zejun; Djekidel, Mohamed Nadhir; Li, Yanjian; Qian, Min-Ping; Zhang, Michael Q.; Chen, Yang |
| 2014 | Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells | Guo, Weilong; Chung, Wen-Yu; Qian, Minping; Pellegrini, Matteo; Zhang, Michael Q. |
| 2015 | A common set of distinct features that characterize noncoding RNAs across multiple species | Hu, Long; Di, Chao; Kai, Mingxuan; Yang, Yu-Cheng T.; Li, Yang; Qiu, Yunjiang; Hu, Xihao; Yip, Kevin Y.; Zhang, Michael Q.; Lu, Zhi John |
| 7-Jan-2022 | A data-driven method to learn a jump diffusion process from aggregate biological gene expression data | Gao, Jia-Xing; Wang, Zhen-Yi; Zhang, Michael Q.; Qian, Min-Ping; Jiang, Da-Quan |
| Mar-2023 | Development and Experimental Validation of a Novel Prognostic Signature for Gastric Cancer | Liu, Chengcheng; Huo, Yuying; Zhang, Yansong; Yin, Fumei; Chen, Taoyu; Wang, Zhenyi; Gao, Juntao; Jin, Peng; Li, Xiangyu; Shi, Minglei; Zhang, Michael Q. |
| 2015 | Integrative analysis of haplotype-resolved epigenomes across human tissues | Leung, Danny; Jung, Inkyung; Rajagopal, Nisha; Schmitt, Anthony; Selvaraj, Siddarth; Lee, Ah Young; Yen, Chia-An; Lin, Shin; Lin, Yiing; Qiu, Yunjiang; Xie, Wei; Yue, Feng; Hariharan, Manoj; Ray, Pradipta; Kuan, Samantha; Edsall, Lee; Yang, Hongbo; Chi, Neil C.; Zhang, Michael Q.; Ecker, Joseph R.; Ren, Bing |
| 2016 | Mammalian non-CG methylations are conserved and cell-type specific and may have been involved in the evolution of transposon elements | Guo, Weilong; Zhang, Michael Q.; Wu, Hong |
| 11-Jan-2022 | MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection | Wang, Zhenyi; Zhong, Yanjie; Ye, Zhaofeng; Zeng, Lang; Chen, Yang; Shi, Minglei; Yuan, Zhiyuan; Zhou, Qiming; Qian, Minping; Zhang, Michael Q. |
| 11-Jan-2022 | MyoD is a 3D genome structure organizer for muscle cell identity | Wang, Ruiting; Chen, Fengling; Chen, Qian; Wan, Xin; Shi, Minglei; Chen, Antony K.; Ma, Zhao; Li, Guohong; Wang, Min; Ying, Yachen; Liu, Qinyao; Li, Hu; Zhang, Xu; Ma, Jinbiao; Zhong, Jiayun; Chen, Meihong; Zhang, Michael Q.; Zhang, Yong; Chen, Yang; Zhu, Dahai |
| 2017 | Network embedding-based representation learning for single cell RNA-seq data | Li, Xiangyu; Chen, Weizheng; Chen, Yang; Zhang, Xuegong; Gu, Jin; Zhang, Michael Q. |
| 2011 | Novel Markov model of induced pluripotency predicts gene expression changes in reprogramming | Hu, Zhirui; Qian, Minping; Zhang, Michael Q. |
| 17-Aug-2021 | Quantifying the phase separation property of chromatin-associated proteins under physiological conditions using an anti-1,6-hexanediol index | Shi, Minglei; You, Kaiqiang; Chen, Taoyu; Hou, Chao; Liang, Zhengyu; Liu, Mingwei; Wang, Jifeng; Wei, Taotao; Qin, Jun; Chen, Yang; Zhang, Michael Q.; Li, Tingting |
| 2017 | Recurrently deregulated lncRNAs in hepatocellular carcinoma | Yang, Yang; Chen, Lei; Gu, Jin; Zhang, Hanshuo; Yuan, Jiapei; Lian, Qiuyu; Lv, Guishuai; Wang, Siqi; Wu, Yang; Yang, Yu-Cheng T.; Wang, Dongfang; Liu, Yang; Tang, Jing; Luo, Guijuan; Li, Yang; Hu, Long; Sun, Xinbao; Wang, Dong; Guo, Mingzhou; Xi, Qiaoran; Xi, Jianzhong; Wang, Hongyang; Zhang, Michael Q.; Lu, Zhi John |
| 2016 | Super-resolution dipole orientation mapping via polarization demodulation | Zhanghao, Karl; Chen, Long; Yang, Xu-San; Wang, Miao-Yan; Jing, Zhen-Li; Han, Hong-Bin; Zhang, Michael Q.; Jin, Dayong; Gao, Jun-Tao; Xi, Peng |
| 2016 | Super-resolution Fluorescence Dipole Orientaiton Microscopy | Karl Zhanghao; Chen, Long; Yang, Xusan; Wang, Miaoyan; Jing, Zhenli; Han, Hongbin; Zhang, Michael Q.; Jin, Dayong; Gao, Juntao; Xi, Peng |
