Title | A population-based study of precision health assessments using multi-omics network-derived biological functional modules |
Authors | Zhang, Wei Wan, Ziyun LI, Xiaoyu LI, Rui Luo, Lihua Song, Zijun Miao, Yu Li, Zhiming Wang, Shiyu Shan, Ying Li, Yan Chen, Bangwei Zhen, Hefu Sun, Yuzhe Fang, Mingyan Ding, Jiahong Yan, Yizhen Zong, Yang Wang, Zhen Zhang, Wenwei Yang, Huanming Yang, Shuang Wang, Jian Jin, Xin Wang, Ru Chen, Peijie Min, Junxia Zeng, Yi Li, Tao Xu, Xun Nie, Chao |
Affiliation | BGI Shenzhen, Shenzhen 518083, Peoples R China China Natl GeneBank, Shenzhen 518120, Peoples R China Zhejiang Univ, Affiliated Hosp 1, Inst Translat Med, Sch Med, Hangzhou, Peoples R China Peking Univ, Ctr Hlth Aging & Dev Studies, Natl Sch Dev, Beijing, Peoples R China Shanghai Univ Sport, Sch Exercise & Hlth, Shanghai Frontiers Sci Res Base Exercise & Metab H, Shanghai, Peoples R China Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen 518083, Peoples R China James D Watson Inst Genome Sci, Hangzhou 310058, Peoples R China South China Univ Technol, Sch Biol & Biol Engn, Guangzhou 510006, Peoples R China |
Keywords | INTIMA-MEDIA THICKNESS COMMUNITY STRUCTURE GUT MICROBIOTA CAROTID PLAQUE ASSOCIATION TAURINE SCALE TOOL |
Issue Date | 20-Dec-2022 |
Publisher | CELL REPORTS MEDICINE |
Abstract | Recent technological advances in multi-omics and bioinformatics provide an opportunity to develop preci-sion health assessments, which require big data and relevant bioinformatic methods. Here we collect multi-omics data from 4,277 individuals. We calculate the correlations between pairwise features from cross-sectional data and then generate 11 biological functional modules (BFMs) in males and 12 BFMs in fe-males using a community detection algorithm. Using the features in the BFM associated with cardiometa-bolic health, carotid plaques can be predicted accurately in an independent dataset. We developed a model by comparing individual data with the health baseline in BFMs to assess health status (BFM-ash). Then we apply the model to chronic patients and modify the BFM-ash model to assess the effects of consuming grape seed extract as a dietary supplement. Finally, anomalous BFMs are identified for each subject. Our BFMs and BFM-ash model have huge prospects for application in precision health assessment. |
URI | http://hdl.handle.net/20.500.11897/668384 |
ISSN | 2666-3791 |
DOI | 10.1016/j.xcrm.2022.100847 |
Indexed | SCI(E) |
Appears in Collections: | 国家发展研究院 |